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Li X, Jankowski H, Boonpatcharanon S, Tran V, Wang X, Heffernan JM.  2016.  Clustering Neuraminidase Influenza Protein Sequences. BIOMAT 2015: International Symposium on Mathematical and Computational Biology. :210–220.
Li X, Jankowski H, Wang X, Heffernan JM.  2015.  A Method for Clustering Hemagglutinin Influenza Protein Sequences. BIOMAT 2014: International Symposium on Mathematical and Computational Biology. :272–285.
Heffernan JM.  2011.  Mathematical Immunology of Infectious Diseases. Mathematical Population Studies. 18(2):47-54.
Heffernan JM, Smith RJ, Wahl LM.  2005.  Perspectives on the basic reproductive ratio.. Journal of the Royal Society, Interface / the Royal Society. 2(4):281-93. Abstract
Heffernan JM, Keeling MJ.  2009.  Implications of vaccination and waning immunity.. Proceedings. Biological sciences / The Royal Society. 276(1664):2071-80. Abstract
Heffernan JM, Wahl LM.  2005.  Treatment Interruptions and Resistance: A Review.. Deterministic and Stochastic Models for AIDS Epidemics and HIV Infection with Interventions. :423-456.